Exploring the power of transcriptomic approaches to identify biomarkers associated to renal damage in Systemic Lupus Erythematosus patients
PDF (Español)
XML (Español)

Keywords

Systemic Lupus Erythematosus
Lupus Nephritis
microRNAs
biomarkers

How to Cite

1.
Arrieta Bravo V, Rangel Gómez T, Pacheco Lugo L. Exploring the power of transcriptomic approaches to identify biomarkers associated to renal damage in Systemic Lupus Erythematosus patients: Explorando el poder de los abordajes transcriptómicos para identificar biomarcadores asociados a daño renal en pacientes con lupus eritematoso sistémico. Rev. Colomb. Nefrol. [Internet]. 2021 Feb. 2 [cited 2024 Apr. 18];8(1):e492. Available from: https://revistanefrologia.org/index.php/rcn/article/view/492

Abstract

Systemic Lupus Erythematosus is a complex and highly heterogeneous disease affecting multiple organs such as joints, heart, hematopoietic system, nervous system and kidney, the latter being the worst prognosis and leading to lupus nephritis (LN). While the etiopathogenesis of SLE is still not completely clear, is believed that genetic susceptibility and aberrant epigenetic modifications favor the outcome of the disease. In order to establish an accurate therapy, it is necessary to efficiently and objectively assess organ involvement and disease activity, which is very difficult due to the clinical laboratory tests currently available. In recent decades, the search for new SLE biomarkers has been a trend and many promising biomarkers have been identified at the genomic, metabolomic, proteomic and transcriptomic levels. In this review we summarize the state of the art related to transcriptomic studies that have identified various potentially useful transcripts as biomarkers of SLE and NL.

https://doi.org/10.22265/acnef.8.1.492
PDF (Español)
XML (Español)

References

Honarpisheh M, Köhler P, von Rauchhaupt E, Lech M. The Involvement of MicroRNAs in Modulation of Innate and Adaptive Immunity in Systemic Lupus Erythematosus and Lupus Nephritis. J Immunol Res. 2018;2018:1-15. https://doi.org/10.1155/2018/4126106

Zhu H, Mi W, Luo H, Chen T, Liu S, Raman I, et al. Whole-genome transcription and DNA methylation analysis of peripheral blood mononuclear cells identified aberrant gene regulation pathways in systemic lupus erythematosus. Arthritis Res Ther. diciembre de 2016;18(1):162. https://doi.org/10.1186/s13075-016-1050-x

Koutsokeras T, Healy T. Systemic lupus erythematosus and lupus nephritis. Nat Rev Drug Discov. marzo de 2014;13(3):173-4. https://doi.org/10.1038/nrd4227

Arroyo C AR, García R, Aroca G, Cadena A, Acosta J. Correlación clínica e inmunohistopatológica de la nefropatía lúpica en un centro de referencia del Caribe colombiano durante los años 2012 a 2013. Rev Colomb Nefrol. 1 de julio de 2014;1(2):57-64. https://doi.org/10.22265/acnef.1.2.176

Coit P, Renauer P, Jeffries MA, Merrill JT, McCune WJ, Maksimowicz-McKinnon K, et al. Renal involvement in lupus is characterized by unique DNA methylation changes in naïve CD4+ T cells. J Autoimmun. julio de 2015;61:29-35. https://doi.org/10.1016/j.jaut.2015.05.003

Meliambro K, Campbell KN, Chung M. Therapy for Proliferative Lupus Nephritis. Rheum Dis Clin N Am. noviembre de 2018;44(4):545-60. https://doi.org/10.1016/j.rdc.2018.06.002

Schwartz N, Goilav B, Putterman C. The pathogenesis, diagnosis and treatment of lupus nephritis: Curr Opin Rheumatol. septiembre de 2014;26(5):502-9. https://doi.org/10.1097/BOR.0000000000000089

Zumerle S, Alimonti A. In and out from senescence. Nat Cell Biol. julio de 2020;22(7):753-4. https://doi.org/10.1038/s41556-020-0540-x

Guo Y, Zhao M, Lu Q. Transcription factor RFX1 is ubiquitinated by E3 ligase STUB1 insystemic lupus erythematosus. Clin Immunol. 2016;169:1-7. https://dx.doi.org/10.1016/j.clim.2016.06.003

Luo J, Niu X, Liu H, Zhang M, Chen M, Deng S. Up-regulation of transcription factorBlimp1 in systemic lupus erythematosus. Mol Immunol. 2013;56(4):574-82. https://dx.doi.org/10.1016/j.molimm.2013.05.241

Ban T, Sato GR, Tamura T. Regulation and role of the transcription factor IRF5 in inna-te immune responses and systemic lupus erythematosus. Int Immunol. 2018;30(11):529-36.https://dx.doi.org/10.1093/intimm/dxy032

Jiang T, Tian F, Zheng H, Whitman SA, Lin Y, Zhang Z,et al.Nrf2 suppresses lupus neph-ritis through inhibition of oxidative injury and the NF-?B-mediated inammatory response.Kidney Int. 2014;85(2):333-43. https://dx.doi.org/10.1038/ki.2013.343

Mathenia J, Reyes-Cortes E, Williams S, Molano I, Ruiz P, Watson DK,et al.Impact of Fli-1 transcription factor on autoantibody and lupus nephritis in NZM2410 mice: Effect of Fli-1gene on lupus in NZM2410 mice. Clin Exp Immunol. 2010;162(2):362-71. https://dx.doi.org/10.1111/j1365-2249.2010.04245.x

Sui W, Hou X, Che W, Yang M, Dai Y. The applied basic research of systemic lupus erythematosus based on the biological omics. Genes Immun. abril de 2013;14(3):133-46. https://doi.org/10.1038/gene.2013.3

Sui W, Lin H, Chen J, Ou M, Dai Y. Comprehensive analysis of transcription factor expression patterns in peripheral blood mononuclear cell of systemic lupus erythematosus. Int J Rheum Dis. abril de 2012;15(2):212-9. https://doi.org/10.1111/j.1756-185X.2012.01718.x

Kuo C-C, Lin S-C. Altered FOXO1 Transcript Levels in Peripheral Blood Mononuclear Cells of Systemic Lupus Erythematosus and Rheumatoid Arthritis Patients. Mol Med. noviembre de 2007;13(11-12):561-6. https://doi.org/10.2119/2007-00021.Kuo

Frangou EA, Bertsias GK, Boumpas DT. Gene expression and regulation in systemic lupus erythematosus. Eur J Clin Invest. octubre de 2013;43(10):1084-96. https://doi.org/10.1111/eci.12130

Wu H, Zeng J, Yin J, Peng Q, Zhao M, Lu Q. Organ-specific biomarkers in lupus. Autoimmun Rev. abril de 2017;16(4):391-7. https://doi.org/10.1016/j.autrev.2017.02.011

Li Y, Fang X, Li Q-Z. Biomarker Profiling for Lupus Nephritis. Genomics Proteomics Bioinformatics. junio de 2013;11(3):158-65. https://doi.org/10.1016/j.gpb.2013.05.003

Stagakis E, Bertsias G, Verginis P, Nakou M, Hatziapostolou M, Kritikos H, et al. Identification of novel microRNA signatures linked to human lupus disease activity and pathogenesis: miR-21 regulates aberrant T cell responses through regulation of PDCD4 expression. Ann Rheum Dis. 1 de agosto de 2011;70(8):1496-506. https://doi.org/10.1136/ard.2010.139857

Navarro-Quiroz E, Pacheco-Lugo L, Lorenzi H, Díaz-Olmos Y, Almendrales L, Rico E, et al. High-Throughput Sequencing Reveals Circulating miRNAs as Potential Biomarkers of Kidney Damage in Patients with Systemic Lupus Erythematosus. Zhou X, editor. PLOS ONE. 11 de noviembre de 2016;11(11):e0166202. https://doi.org/10.1371/journal.pone.0166202

Navarro-Quiroz E, Pacheco-Lugo L, Navarro-Quiroz R, Lorenzi H, España-Puccini P, Díaz-Olmos Y, et al. Profiling analysis of circulating microRNA in peripheral blood of patients with class IV lupus nephritis. Zhou X, editor. PLOS ONE. 14 de noviembre de 2017;12(11):e0187973. https://doi.org/10.1371/journal.pone.0187973

Navarro-Quiroz E, Pacheco-Lugo L, Navarro-Quiroz R, Lorenzi H, España- Puccini P,Díaz-Olmos Y,et al.Proling analysis of circulating microRNA in peripheral blood ofpatients with class IV lupus nephritis. PLoS One. 2017;12(11):e0187973. https://dx.doi.org/10.1371/journal.pone.0187973

Martínez-Ramos R, García-Lozano J-R, Lucena J-M, Castillo-Palma M-J, García-Hernández F, Rodríguez M-C, et al. Differential expression pattern of microRNAs in CD4+ and CD19+ cells from asymptomatic patients with systemic lupus erythematosus. Lupus. abril de 2014;23(4):353-9. https://doi.org/10.1177/0961203314522335

Kusaoi M, Yamaji K, Ishibe Y, Murayama G, Nemoto T, Sekiya F, et al. Separation of Circulating MicroRNAs Using Apheresis in Patients With Systemic Lupus Erythematosus: Circulating miRNAs are Separated by Apheresis. Ther Apher Dial. agosto de 2016;20(4):348-53. https://doi.org/10.1111/1744-9987.12471

Jafari Ghods F, Topal Sarikaya A, Arda N, Hamuryudan V. MiRNA and mRNA Profiling in Systemic Lupus Reveals a Novel Set of Cytokine - Related miRNAs and their Target Genes in Cases With and Without Renal Involvement. Kidney Blood Press Res. 2017;42(6):1322-37. https://doi.org/10.1159/000485987

Te JL, Dozmorov IM, Guthridge JM, Nguyen KL, Cavett JW, Kelly JA, et al. Identification of unique microRNA signature associated with lupus nephritis. PloS One. 2010;5(5):e10344. https://doi.org/10.1371/journal.pone.0010344

Carlsen AL, Schetter AJ, Nielsen CT, Lood C, Knudsen S, Voss A, et al. Circulating MicroRNA Expression Profiles Associated With Systemic Lupus Erythematosus. Arthritis Rheum. mayo de 2013;65(5):1324-34. https://doi.org/10.1002/art.37890

Lu J, Kwan BC, Lai FM, Tam LS, Li EK, Chow K,et al.Glomerular and tubulointerstitialmiR-638, miR-198 and miR-146a expression in lupus nephritis: miRNA in lupus nephritis.Nephrology (Carlton). 2012;17(4):346-51. https://dx.doi.org/10.1111/j.1440-1797.2012.01573.x

Rudnicki M, Perco P, D’haene B, Leierer J, Heinzel A, Mühlberger I,et al.RenalmicroRNA- and RNA-proles in progressive chronic kidney disease. Eur J Clin Invest.2016;46(3):213-26. https://dx.doi.org/10.1111/eci.12585

Trionni P, Benigni A, Remuzzi G. MicroRNAs in kidney physiology and disease. Nat RevNephrol. 2015;11(1):23-33. https://dx.doi.org/10.1038/nrneph.2014.202

Krasoudaki E, Stagakis E, Loupasakis K, Papagianni A, Alexopoulos E, Bertsias G, et al. SAT0006 Microrna analysis of human lupus nephritis: Evidence for modulation of kallikrein 4 by MIR-422A. Ann Rheum Dis. junio de 2013;71(Suppl 3):472.3-473. https://doi.org/10.1136/annrheumdis-2012-eular.2954

Rai R, Chauhan SK, Singh VV, Rai M, Rai G. RNA-seq Analysis Reveals Unique Transcriptome Signatures in Systemic Lupus Erythematosus Patients with Distinct Autoantibody Specificities. Crispin JC, editor. PLOS ONE. 11 de noviembre de 2016;11(11):e0166312. https://doi.org/10.1371/journal.pone.0166312

Chauhan SK, Singh VV, Rai R, Rai M, Rai G. Distinct Autoantibody Profiles in Systemic Lupus Erythematosus Patients are Selectively Associated with TLR7 and TLR9 Upregulation. J Clin Immunol. julio de 2013;33(5):954-64. https://doi.org/10.1007/s10875-013-9887-0

Chauhan SK, Singh VV, Rai R, Rai M, Rai G. Differential microRNA Profile and Post-Transcriptional Regulation Exist in Systemic Lupus Erythematosus Patients with Distinct Autoantibody Specificities. J Clin Immunol. mayo de 2014;34(4):491-503. https://doi.org/10.1007/s10875-014-0008-5

Rai R, Chauhan SK, Singh VV, Rai M, Rai G. Heat shock protein 27 and its regulatory molecules express differentially in SLE patients with distinct autoantibody profiles. Immunol Lett. marzo de 2015;164(1):25-32. https://doi.org/10.1016/j.imlet.2015.01.007

Bramham K, Mistry HD, Poston L, Chappell LC, Thompson AJ. The non- invasive biopsy–will urinary proteomics make the renal tissue biopsy redundant? QJM. 2009;102(8):523-38.https://dx.doi.org/10.1093/qjmed/hcp071

Magalhães P, Pejchinovski M, Markoska K, Banasik M, Klinger M, Švec-Billá D,et al.Association of kidney brosis with urinary peptides: a path towards non- invasive liquidbiopsies? Sci Rep. 2017;7(1):16915. https://dx.doi.org/10.1038/s41598-017-17083-w

Pacheco Lugo L, Díaz Olmos Y, Aroca Martínez G. Biomarcadores en fluídos biológicos y su potencial uso como indicadores de nefritis lúpica en individuos con lupus eritematoso sistémico. Rev Colomb Nefrol. 1 de enero de 2014;1(1):39-47. https://doi.org/10.22265/acnef.1.1.171

Cardenas-Gonzalez M, Srivastava A, Pavkovic M, Bijol V, Rennke HG, Stillman IE, et al. Identification, Confirmation, and Replication of Novel Urinary MicroRNA Biomarkers in Lupus Nephritis and Diabetic Nephropathy. Clin Chem. 1 de septiembre de 2017;63(9):1515-26. https://doi.org/10.1373/clinchem.2017.274175

Abulaban KM, Fall N, Nunna R, Ying J, Devarajan P, Grom A, et al. Relationship of cell-free urine MicroRNA with lupus nephritis in children. Pediatr Rheumatol. diciembre de 2016;14(1):4. https://doi.org/10.1186/s12969-016-0064-x

Santiago-Dieppa DR, Steinberg J, Gonda D, Cheung VJ, Carter BS, Chen CC. Extracellular vesicles as a platform for 'liquid biopsy' in glioblastoma patients. Expert Rev Mol Diagn. septiembre de 2014;14(7):819-25. https://doi.org/10.1586/14737159.2014.943193

Chun-yan L, Zi-yi Z, Tian-lin Y, Yi-li W, Bao L, Jiao L, et al. Liquid biopsy biomarkers of renal interstitial fibrosis based on urinary exosome. Exp Mol Pathol. octubre de 2018;105(2):223-8. https://doi.org/10.1016/j.yexmp.2018.08.004

Solé, Moliné, Vidal, Ordi-Ros, Cortés-Hernández. An Exosomal Urinary miRNA Signature for Early Diagnosis of Renal Fibrosis in Lupus Nephritis. Cells. 25 de julio de 2019;8(8):773. https://doi.org/10.3390/cells8080773

Garcia-Vives E, Solé C, Moliné T, Vidal M, Agraz I, Ordi-Ros J,et al.The Urinary ExosomalmiRNA Expression Prole is Predictive of Clinical Response in Lupus Nephritis. Int J MolSci. 2020;21(4):1372. https://dx.doi.org/10.3390/ijms21041372

Solé C, Moliné T, Vidal M, Ordi-Ros J, Cortés-Hernández J. An Exosomal Urinary miR-NA Signature for Early Diagnosis of Renal Fibrosis in Lupus Nephritis. Cells. 2019;8(8):773.https://dx.doi.org/10.3390/cells8080773

Li Y, Xu X, Tang X, Bian X, Shen B, Zhao H, et al. MicroRNA expression profile of urinary exosomes in Type IV lupus nephritis complicated by cellular crescent. J Biol Res-Thessalon. diciembre de 2018;25(1):16. https://doi.org/10.1186/s40709-018-0088-0

Guan J, Wang G, Tam L-S, Kwan B-H, Li E-M, Chow K-M, et al. Urinary sediment ICAM-1 level in lupus nephritis. Lupus. octubre de 2012;21(11):1190-5. https://doi.org/10.1177/0961203312451334

Jakiela B, Kosa?ka J, Plutecka H, W?grzyn AS, Bazan-Socha S, Sanak M, et al. Urinary cytokines and mRNA expression as biomarkers of disease activity in lupus nephritis. Lupus. julio de 2018;27(8):1259-70. https://doi.org/10.1177/0961203318770006

Perez-Hernandez J, Forner MJ, Pinto C, Chaves FJ, Cortes R, Redon J. Increased Urinary Exosomal MicroRNAs in Patients with Systemic Lupus Erythematosus. Alvarez ML, editor. PLOS ONE. 21 de septiembre de 2015;10(9):e0138618. https://doi.org/10.1371/journal.pone.0138618

Creative Commons License

This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.

Copyright (c) 2021 Revista Colombiana de Nefrología

Dimensions


PlumX


Downloads

Download data is not yet available.